During the Corporate Command mission where the player is supposed to help Anton Nasser destroy the Cyclops HQ, I may have destroyed it before Anton even got near the station. For some reason, Anton didn't dock with the station, and both him, Kate Morgental, and the rest of the force that they brought along, is just circling the station and doing nothing. I am unable to dock with Anton as he keeps on moving, and docking with the Cyclops HQ does nothing either.
Then, upon attempting to run Transcendence in debug mode, I encountered another issue: the debug mode is selected on the title screen when I load my save file, but once I am in game, I am unable to open the console via F9. I have not changed the key for it, and when I save and quit to the title screen, debug mode has changed to play mode.